tag: freesurfer

Caching FreeSurfer measurements for faster access

2019-06-20

We love being able to access the freshest data directly from our XNAT platform. By querying it from Jupyter notebooks, we make sure to have full control on the resource provenance. But let's admit it, beyond a couple of thousands of participants, collecting - and re-collecting - the data every time can …


When XNAT and the HPC cannot see each other...

2019-06-20

This was written before XNAT releases its container service. XNAT can be configured so that processing jobs may be sent over a high performance computing system. Recent versions now also supports the use of containerization. We put up a "manual" to allow exporting jobs from XNAT in contexts where its …


Importing external resources to XNAT

2019-05-28

We tend to give general preference to data coming from local "XNAT-native" workflows. Yet sometimes some factors (e.g. related to computational power, software availability) may require us to import resources from external, less controlled, data sources.

This example shows how to get external archives imported to an XNAT instance …